Detailed information of SNP:
|
SNP ID:
sf1127094515(Gbrowse)
Chromosome: chr11 Position: 27094515 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 91.57% | 8.43% |
| All Indica | 795 | 94.34% | 5.66% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127094515 | A->G | LOC_Os11g45530(LOC_Os11g45530.1) | Synonymous |