Detailed information of SNP:
|
SNP ID:
sf1127097380(Gbrowse)
Chromosome: chr11 Position: 27097380 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 96.62% | 3.38% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 472 | 90.89% | 9.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 313 | 88.50% | 11.50% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127097380 | G->A | INTERGENIC | None |