Detailed information of SNP:
|
SNP ID:
sf1127102469(Gbrowse)
Chromosome: chr11 Position: 27102469 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.00% | 28.00% |
| All Indica | 798 | 71.55% | 28.45% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127102469 | C->A | LOC_Os11g45540(LOC_Os11g45540.1) | Non-Synonymous SNP |