Detailed information of SNP:
|
SNP ID:
sf1127102854(Gbrowse)
Chromosome: chr11 Position: 27102854 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.41% | 26.59% |
| All Indica | 798 | 72.56% | 27.44% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 80.75% | 19.25% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127102854 | C->T | INTERGENIC | None |