Detailed information of SNP:
|
SNP ID:
sf1127102978(Gbrowse)
Chromosome: chr11 Position: 27102978 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 73.92% | 26.08% |
| All Indica | 794 | 72.92% | 27.08% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 371 | 81.67% | 18.33% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127102978 | C->T | INTERGENIC | None |