Detailed information of SNP:
|
SNP ID:
sf1127106435(Gbrowse)
Chromosome: chr11 Position: 27106435 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 59.68% | 40.32% |
| All Indica | 780 | 78.33% | 21.67% |
| All Japonica | 491 | 30.35% | 69.65% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 371 | 87.06% | 12.94% |
| Indica II | 212 | 80.66% | 19.34% |
| Indica Intermediate | 197 | 59.39% | 40.61% |
| Temperate Japonica | 331 | 31.42% | 68.58% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127106435 | G->A | LOC_Os11g45560(LOC_Os11g45560.1) | INTRON |