Detailed information of SNP:
|
SNP ID:
sf1127108756(Gbrowse)
Chromosome: chr11 Position: 27108756 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 79.60% | 20.40% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 496 | 78.63% | 21.37% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127108756 | T->C | INTERGENIC | None |