Detailed information of SNP:
|
SNP ID:
sf1127110573(Gbrowse)
Chromosome: chr11 Position: 27110573 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 79.38% | 20.62% |
| All Indica | 796 | 82.16% | 17.84% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127110573 | T->C | INTERGENIC | None |