Detailed information of SNP:
|
SNP ID:
sf1127120134(Gbrowse)
Chromosome: chr11 Position: 27120134 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 81.75% | 18.25% |
| All Indica | 795 | 82.52% | 17.48% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 79.09% | 20.91% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127120134 | A->G | LOC_Os11g45590(LOC_Os11g45590.3) | INTRON |
| sf1127120134 | A->G | LOC_Os11g45590(LOC_Os11g45590.1) | INTRON |
| sf1127120134 | A->G | LOC_Os11g45590(LOC_Os11g45590.2) | INTRON |