Detailed information of SNP:
|
SNP ID:
sf1127179408(Gbrowse)
Chromosome: chr11 Position: 27179408 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.11% | 10.89% |
| All Indica | 794 | 85.01% | 14.99% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.1) | INTRON |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.6) | INTRON |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.7) | UTR_3_PRIME |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.4) | INTRON |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.5) | INTRON |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.3) | INTRON |
| sf1127179408 | G->A | LOC_Os11g45710(LOC_Os11g45710.2) | INTRON |