Detailed information of SNP:
|
SNP ID:
sf1127184598(Gbrowse)
Chromosome: chr11 Position: 27184598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.25% | 13.75% |
| All Indica | 798 | 83.33% | 16.67% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127184598 | A->G | INTERGENIC | None |