Detailed information of SNP:
|
SNP ID:
sf1127185149(Gbrowse)
Chromosome: chr11 Position: 27185149 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 53.79% | 46.21% |
| All Indica | 794 | 75.82% | 24.18% |
| All Japonica | 495 | 20.40% | 79.60% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 210 | 80.00% | 20.00% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127185149 | T->A | LOC_Os11g45720(LOC_Os11g45720.1) | Non-Synonymous SNP |