Detailed information of SNP:
|
SNP ID:
sf1127197131(Gbrowse)
Chromosome: chr11 Position: 27197131 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 69.28% | 30.72% |
| All Indica | 775 | 53.42% | 46.58% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 372 | 63.71% | 36.29% |
| Indica II | 202 | 41.09% | 58.91% |
| Indica Intermediate | 201 | 46.77% | 53.23% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127197131 | G->T | INTERGENIC | None |