Detailed information of SNP:
|
SNP ID:
sf1127205527(Gbrowse)
Chromosome: chr11 Position: 27205527 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.02% | 30.98% |
| All Indica | 797 | 80.43% | 19.57% |
| All Japonica | 497 | 47.69% | 52.31% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 66.58% | 33.42% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127205527 | A->T | INTERGENIC | None |