Detailed information of SNP:
|
SNP ID:
sf1127206456(Gbrowse)
Chromosome: chr11 Position: 27206456 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.90% | 27.10% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 497 | 61.77% | 38.23% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 61.49% | 38.51% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127206456 | C->T | INTERGENIC | None |