Detailed information of SNP:
|
SNP ID:
sf1127207018(Gbrowse)
Chromosome: chr11 Position: 27207018 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 85.10% | 14.90% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127207018 | C->G | INTERGENIC | None |