Detailed information of SNP:
|
SNP ID:
sf1127210737(Gbrowse)
Chromosome: chr11 Position: 27210737 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 74.19% | 25.81% |
| All Indica | 758 | 83.91% | 16.09% |
| All Japonica | 460 | 55.87% | 44.13% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 355 | 83.66% | 16.34% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 308 | 48.38% | 51.62% |
| Tropical Japonica | 88 | 82.95% | 17.05% |
| Japonica Intermediate | 64 | 54.69% | 45.31% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127210737 | G->A | INTERGENIC | None |