Detailed information of SNP:
|
SNP ID:
sf1127219841(Gbrowse)
Chromosome: chr11 Position: 27219841 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.15% | 16.85% |
| All Indica | 798 | 77.82% | 22.18% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 78.61% | 21.39% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127219841 | C->T | LOC_Os11g45750(LOC_Os11g45750.1) | INTRON |