Detailed information of SNP:
|
SNP ID:
sf1127220942(Gbrowse)
Chromosome: chr11 Position: 27220942 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.86% | 17.14% |
| All Indica | 798 | 77.57% | 22.43% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127220942 | G->A | LOC_Os11g45750(LOC_Os11g45750.1) | INTRON |