Detailed information of SNP:
|
SNP ID:
sf1127225248(Gbrowse)
Chromosome: chr11 Position: 27225248 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 89.58% | 10.42% |
| All Indica | 747 | 81.79% | 18.21% |
| All Japonica | 480 | 99.38% | 0.62% |
| Aus | 58 | 100.00% | 0.00% |
| Indica I | 350 | 65.43% | 34.57% |
| Indica II | 194 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127225248 | G->T | INTERGENIC | None |