Detailed information of SNP:
|
SNP ID:
sf1127252127(Gbrowse)
Chromosome: chr11 Position: 27252127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.83% | 9.17% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127252127 | G->A | INTERGENIC | None |