Detailed information of SNP:
SNP ID:
sf1127253539(Gbrowse)
Chromosome: chr11 Position: 27253539 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1408 | 71.09% | 28.91% |
All Indica | 790 | 76.71% | 23.29% |
All Japonica | 495 | 60.61% | 39.39% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 370 | 73.24% | 26.76% |
Indica II | 211 | 82.94% | 17.06% |
Indica Intermediate | 209 | 76.56% | 23.44% |
Temperate Japonica | 334 | 55.99% | 44.01% |
Tropical Japonica | 93 | 80.65% | 19.35% |
Japonica Intermediate | 68 | 55.88% | 44.12% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1127253539 | C->T | LOC_Os11g45820(LOC_Os11g45820.1) | INTRON |