Detailed information of SNP:



SNP ID: sf1127253539(Gbrowse)

Chromosome: chr11

Position: 27253539
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1408 71.09% 28.91%
All Indica790 76.71% 23.29%
All Japonica495 60.61% 39.39%
Aus67 86.57% 13.43%
Indica I370 73.24% 26.76%
Indica II211 82.94% 17.06%
Indica Intermediate209 76.56% 23.44%
Temperate Japonica334 55.99% 44.01%
Tropical Japonica93 80.65% 19.35%
Japonica Intermediate68 55.88% 44.12%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1127253539 C->T LOC_Os11g45820(LOC_Os11g45820.1) INTRON