Detailed information of SNP:
|
SNP ID:
sf1127253539(Gbrowse)
Chromosome: chr11 Position: 27253539 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 71.09% | 28.91% |
| All Indica | 790 | 76.71% | 23.29% |
| All Japonica | 495 | 60.61% | 39.39% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 370 | 73.24% | 26.76% |
| Indica II | 211 | 82.94% | 17.06% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 334 | 55.99% | 44.01% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127253539 | C->T | LOC_Os11g45820(LOC_Os11g45820.1) | INTRON |