Detailed information of SNP:
|
SNP ID:
sf1127258742(Gbrowse)
Chromosome: chr11 Position: 27258742 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.55% | 14.45% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127258742 | G->A | INTERGENIC | None |