Detailed information of SNP:
|
SNP ID:
sf1127293179(Gbrowse)
Chromosome: chr11 Position: 27293179 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.29% | 10.71% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127293179 | A->T | INTERGENIC | None |