Detailed information of SNP:
|
SNP ID:
sf1127303994(Gbrowse)
Chromosome: chr11 Position: 27303994 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.17% | 17.83% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 70.02% | 29.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 81.49% | 18.51% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127303994 | A->G | INTERGENIC | None |