Detailed information of SNP:
|
SNP ID:
sf1127316303(Gbrowse)
Chromosome: chr11 Position: 27316303 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 87.36% | 12.64% |
| All Indica | 798 | 88.22% | 11.78% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 82.34% | 17.66% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127316303 | A->G | INTERGENIC | None |