Detailed information of SNP:
|
SNP ID:
sf1127317553(Gbrowse)
Chromosome: chr11 Position: 27317553 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 79.74% | 20.26% |
| All Indica | 777 | 79.15% | 20.85% |
| All Japonica | 489 | 83.23% | 16.77% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 359 | 69.92% | 30.08% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 328 | 78.96% | 21.04% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127317553 | C->T | INTERGENIC | None |