Detailed information of SNP:
|
SNP ID:
sf1127318496(Gbrowse)
Chromosome: chr11 Position: 27318496 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 86.89% | 13.11% |
| All Indica | 784 | 82.78% | 17.22% |
| All Japonica | 487 | 95.69% | 4.31% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 363 | 73.83% | 26.17% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 328 | 94.51% | 5.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127318496 | C->A | LOC_Os11g45924(LOC_Os11g45924.1) | Non-Synonymous SNP |