Detailed information of SNP:
|
SNP ID:
sf1127318505(Gbrowse)
Chromosome: chr11 Position: 27318505 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 87.57% | 12.43% |
| All Indica | 779 | 83.83% | 16.17% |
| All Japonica | 488 | 95.70% | 4.30% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 358 | 75.70% | 24.30% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 328 | 94.82% | 5.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127318505 | T->C | LOC_Os11g45924(LOC_Os11g45924.1) | Non-Synonymous SNP |