Detailed information of SNP:
|
SNP ID:
sf1127318532(Gbrowse)
Chromosome: chr11 Position: 27318532 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 88.68% | 11.32% |
| All Indica | 753 | 84.59% | 15.41% |
| All Japonica | 483 | 96.48% | 3.52% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 340 | 75.59% | 24.41% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 324 | 95.68% | 4.32% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127318532 | T->C | LOC_Os11g45924(LOC_Os11g45924.1) | Non-Synonymous SNP |