Detailed information of SNP:
|
SNP ID:
sf1127319858(Gbrowse)
Chromosome: chr11 Position: 27319858 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 83.13% | 16.87% |
| All Indica | 793 | 78.06% | 21.94% |
| All Japonica | 471 | 94.27% | 5.73% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 374 | 65.51% | 34.49% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 313 | 92.65% | 7.35% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127319858 | C->A | LOC_Os11g45924(LOC_Os11g45924.1) | INTRON |