Detailed information of SNP:
|
SNP ID:
sf1127320025(Gbrowse)
Chromosome: chr11 Position: 27320025 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.11% | 9.89% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 495 | 73.94% | 26.06% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 81.14% | 18.86% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127320025 | T->A | LOC_Os11g45924(LOC_Os11g45924.1) | Non-Synonymous SNP |