Detailed information of SNP:
|
SNP ID:
sf1127321956(Gbrowse)
Chromosome: chr11 Position: 27321956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.32% | 5.68% |
| All Indica | 794 | 95.21% | 4.79% |
| All Japonica | 493 | 96.75% | 3.25% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 331 | 96.07% | 3.93% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127321956 | C->T | INTERGENIC | None |