Detailed information of SNP:
|
SNP ID:
sf1127322050(Gbrowse)
Chromosome: chr11 Position: 27322050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 95.00% | 5.00% |
| All Indica | 793 | 95.33% | 4.67% |
| All Japonica | 492 | 97.56% | 2.44% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127322050 | C->T | INTERGENIC | None |