Detailed information of SNP:
|
SNP ID:
sf1127330980(Gbrowse)
Chromosome: chr11 Position: 27330980 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 93.28% | 6.72% |
| All Indica | 797 | 94.23% | 5.77% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127330980 | C->T | INTERGENIC | None |