Detailed information of SNP:
|
SNP ID:
sf1127343058(Gbrowse)
Chromosome: chr11 Position: 27343058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 80.18% | 19.82% |
| All Indica | 797 | 66.75% | 33.25% |
| All Japonica | 493 | 98.78% | 1.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 50.94% | 49.06% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127343058 | C->T | LOC_Os11g45970(LOC_Os11g45970.1) | INTRON |