Detailed information of SNP:
|
SNP ID:
sf1127368645(Gbrowse)
Chromosome: chr11 Position: 27368645 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 56.68% | 43.32% |
| All Indica | 732 | 67.49% | 32.51% |
| All Japonica | 481 | 42.00% | 58.00% |
| Aus | 65 | 40.00% | 60.00% |
| Indica I | 344 | 77.91% | 22.09% |
| Indica II | 190 | 56.84% | 43.16% |
| Indica Intermediate | 198 | 59.60% | 40.40% |
| Temperate Japonica | 323 | 53.87% | 46.13% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 65 | 26.15% | 73.85% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127368645 | T->C | INTERGENIC | None |