Detailed information of SNP:
|
SNP ID:
sf1127368714(Gbrowse)
Chromosome: chr11 Position: 27368714 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 88.82% | 11.18% |
| All Indica | 780 | 89.10% | 10.90% |
| All Japonica | 485 | 89.48% | 10.52% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 368 | 84.51% | 15.49% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 323 | 85.14% | 14.86% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127368714 | T->A | INTERGENIC | None |