Detailed information of SNP:
|
SNP ID:
sf1127373955(Gbrowse)
Chromosome: chr11 Position: 27373955 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 65.18% | 34.82% |
| All Indica | 792 | 73.23% | 26.77% |
| All Japonica | 496 | 55.44% | 44.56% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 372 | 80.11% | 19.89% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 208 | 59.62% | 40.38% |
| Temperate Japonica | 334 | 70.36% | 29.64% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127373955 | G->C | LOC_Os11g46000(LOC_Os11g46000.3) | UTR_3_PRIME |