Detailed information of SNP:
|
SNP ID:
sf1127385306(Gbrowse)
Chromosome: chr11 Position: 27385306 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.72% | 1.28% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 96.91% | 3.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 88.89% | 11.11% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127385306 | C->T | LOC_Os11g46020(LOC_Os11g46020.1) | Non-Synonymous SNP |