Detailed information of SNP:
|
SNP ID:
sf1127386052(Gbrowse)
Chromosome: chr11 Position: 27386052 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 90.77% | 9.23% |
| All Indica | 791 | 83.82% | 16.18% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 206 | 60.68% | 39.32% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127386052 | C->T | LOC_Os11g46020(LOC_Os11g46020.1) | Synonymous |