Detailed information of SNP:
|
SNP ID:
sf1127391541(Gbrowse)
Chromosome: chr11 Position: 27391541 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.50% | 7.50% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127391541 | T->C | LOC_Os11g46030(LOC_Os11g46030.1) | INTRON |