Detailed information of SNP:
|
SNP ID:
sf1127392795(Gbrowse)
Chromosome: chr11 Position: 27392795 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 59.78% | 40.22% |
| All Indica | 771 | 65.89% | 34.11% |
| All Japonica | 495 | 54.34% | 45.66% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 355 | 68.17% | 31.83% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 206 | 51.94% | 48.06% |
| Temperate Japonica | 334 | 68.86% | 31.14% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127392795 | G->A | INTERGENIC | None |