Detailed information of SNP:
|
SNP ID:
sf1127394551(Gbrowse)
Chromosome: chr11 Position: 27394551 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 53.33% | 46.67% |
| All Indica | 757 | 57.86% | 42.14% |
| All Japonica | 493 | 49.09% | 50.91% |
| Aus | 62 | 30.65% | 69.35% |
| Indica I | 347 | 57.35% | 42.65% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 202 | 47.03% | 52.97% |
| Temperate Japonica | 333 | 61.86% | 38.14% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127394551 | G->A | LOC_Os11g46040(LOC_Os11g46040.1) | Synonymous |