Detailed information of SNP:
|
SNP ID:
sf1127404822(Gbrowse)
Chromosome: chr11 Position: 27404822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1265 | 89.01% | 10.99% |
| All Indica | 680 | 82.50% | 17.50% |
| All Japonica | 466 | 97.64% | 2.36% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 306 | 78.43% | 21.57% |
| Indica II | 199 | 87.44% | 12.56% |
| Indica Intermediate | 175 | 84.00% | 16.00% |
| Temperate Japonica | 304 | 98.68% | 1.32% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127404822 | C->T | INTERGENIC | None |