Detailed information of SNP:
|
SNP ID:
sf1127461631(Gbrowse)
Chromosome: chr11 Position: 27461631 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 91.75% | 8.25% |
| All Indica | 772 | 92.49% | 7.51% |
| All Japonica | 482 | 91.49% | 8.51% |
| Aus | 60 | 81.67% | 18.33% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 322 | 94.10% | 5.90% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127461631 | T->C | INTERGENIC | None |