Detailed information of SNP:
|
SNP ID:
sf1127491491(Gbrowse)
Chromosome: chr11 Position: 27491491 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 76.05% | 23.95% |
| All Indica | 795 | 84.40% | 15.60% |
| All Japonica | 490 | 64.08% | 35.92% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 373 | 84.18% | 15.82% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 330 | 71.82% | 28.18% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127491491 | G->A | INTERGENIC | None |