Detailed information of SNP:
|
SNP ID:
sf1127505045(Gbrowse)
Chromosome: chr11 Position: 27505045 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 73.66% | 26.34% |
| All Indica | 785 | 77.45% | 22.55% |
| All Japonica | 496 | 70.56% | 29.44% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 370 | 82.43% | 17.57% |
| Indica II | 207 | 76.33% | 23.67% |
| Indica Intermediate | 208 | 69.71% | 30.29% |
| Temperate Japonica | 334 | 83.53% | 16.47% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127505045 | A->G | INTERGENIC | None |