Detailed information of SNP:
|
SNP ID:
sf1127505541(Gbrowse)
Chromosome: chr11 Position: 27505541 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.22% | 17.78% |
| All Indica | 797 | 86.45% | 13.55% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127505541 | A->G | INTERGENIC | None |