Detailed information of SNP:
|
SNP ID:
sf1127506481(Gbrowse)
Chromosome: chr11 Position: 27506481 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 85.17% | 14.83% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 494 | 78.14% | 21.86% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 333 | 89.49% | 10.51% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1127506481 | T->C | INTERGENIC | None |